C-panel Autoresponders not working with CGI Script

Ok since i couldnt get anyone to help out with the PHP thing, i got my form to send the email out using a version of FORMMAIL (called form email i think)

Any who,
now that the email is sent, the autoresponder that i have set up on the account will not auto respond to the email the CGI script sends it. The autoresponder works if an email is sent to it via regular email, but the CGI generated email isnt being replied to.

I have the autoresponder set up in C-Panel.

Anyone else had a similar problem or know a work around?