What am I doing wrong? Java/Flash/popup issues

both my webpage and a webpage I made for a family member have most of their navigation in pop up windows controlled by java script. when you go to www.cathygrayson.com directly through you browser everything pops up at the appropriate size but when you click on it though the link in my portfolio it opens in a window the same size as my pages popup window @ [url=“http://www.quantummirage.com”]www.quantummirage.com. Help please:h: