Converting Actionscripted Flash to FLV

I have created an animation using mainly actionscript to control it. I have now been told by the client that they now want a timeline and play / pause buttons for it. Now instead of redoing the whole site, as its event driven and wouldnt work if i just threw timeline functionality into the swf, I thought I could export it as a .mov then convert it into a .flv and create a player with buttons and a timeline.

However I just tried to export it, but it only converted the first frame of the main movieclip, as im guessing, it doesnt act the same as the published swf and use the events, which is brilliant :td:

Anyone know how I can get around this problem??

Thanks
dai2
:mr_potato: